Scaffold Ga0211734

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_11335132 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020159 Open in IMG/M

Scaffold ID

Ga0211734_11335132 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15479
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (68.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15479

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (68.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 12
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 12

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F005697	Metagenome / Metatranscriptome	392	Y
F025683	Metagenome / Metatranscriptome	200	Y
F058101	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1133513210	F003134	N/A	MTQWNPVWLVEIDGVEYTDAILANLVIRSGRTNIYEQAQAGYVNLQLIDVNQTAIPISINSTIGVSVKNTANTFVPIFGGNVVDIGLEVRDVGSTMFTQTYSITALGALARLPKALTNGVLSKEFDGDQIYDILKNVLFGSWASVPGALTWATYNPTTTWANAENTGLGEIDRPGNYELAARSSERTDVYSLVSALATSGLGYIYEDSAGRIGYADSTHRTQYLAANGYVDLDANHARAAGLRIETRVGDVRNSLTIKYGATSSNEQSASDAASIAQYGTLAQIITTTLHNSADALAQANFYLSLRAEPEPIFSEISFDLTNPEIDNADRDNLISIFMGEAIALQNLPLNMNSGTFQGFVEGWSFKASYNQLSVTLLLSPLAYSLQAMRWNDVPITETWSSVSPTLDWANATIVA
Ga0211734_1133513219	F025683	GGAG	MVLDLLDPQTLGRLVLVVILMVISAAAGYAKGFKEGKREGMARRKSMVRHLSNKAVN
Ga0211734_1133513220	F005697	AGGCGG	MGFLDNYEASRERLERWLATYPLGCIETRIVEFSAEKGYVLVEAKAWRKDTDEKPAGVDYAYGYLGAYQPNMKRWFVEDTVTSAIMRVQQLVLGGAERSTKEVMSQVENAEKHYDYWTTKFGDVPSYKTEAEVHAAGIVNAADAIAQIATELGGKLADESPQCSHGHMIWKQSHDGSPKTWGGYFCTERTKATQCQPRWYVLASDGKWKPQV
Ga0211734_1133513221	F058101	GGA	MSDFDLKKIYTSPDGNIYSFSGYGGVENCSDCDDFTQVNEYNRDDGLVCWFCKRCEDRLH
Ga0211734_1133513222	F000403	N/A	MSDYVEMINPQTMTCRLLKNGAVVAIYKMSQCDKCSMLSKHDDFGYQKGYDATEKIIWFCGGCR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211734_11335132

Overview

Ecosystem & Geography

Associated Families

Sequences