NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_11312784

Scaffold Ga0211734_11312784


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11312784 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2443
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005633Metagenome / Metatranscriptome394Y
F009147Metagenome / Metatranscriptome322N
F062574Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_113127843F009147N/AMAVQADIATEYSMGRQGFQLVTSTAAQTGNWSALVPIEPTVFTSITGTNISGTWSSKTIPAGQPLPGEITGFQISSGSVVAFLARS
Ga0211734_113127844F005633N/AMRIATTISVDKNGKTKLVSGPEVDATLQRDGFNTANVPEGGKLILWIQGALAPKVRKG
Ga0211734_113127845F062574N/AAPAPEPVAPVRIENLGNSLLEKHKSLRAGAERNRFLVSNHSELLRQSALIAPQNANTFAQGLVVDYLADAVITVISAKLAMISNFTRNVGLDNLRPRATVQVKKFTTGDAAVDNATNFEDGAANQSTLAATSVTVNQITKTFTVTQQELNQGFALSDLSQGSAEIFALAISKKVTAVMTSGNYGAGTTIGTAANFDSSDLPAILALAKNYRQKLLLLDGGHLARLMFSGQLTASAGTNPFPDSRYGPLNNGYFGFANILEQNDWTGAIANTAGFVCGQDAIAVASGLPVGMIAGEFLEQRTVELSNGLSVLLSVWYSRATRAHMASYDIMFGAAAADTTQAEVLITA
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