NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211734_11262817

Scaffold Ga0211734_11262817


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11262817 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8465
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021983Metagenome / Metatranscriptome216Y
F031493Metagenome / Metatranscriptome182Y
F084133Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_112628171F031493GGAMRNFAKDGPPKYRKPDPLHKGWHYIGDGKFHDPTLGSDPMRGRRWMIDPGAGSGKSFSKFQQGLNND
Ga0211734_112628174F021983N/AMNEWPTVPMGNLQAMMVMRQQSTPVSSISSFDPYQAMLRRKQSNVSDESGYINAEVEQYDPKDIQALEEFCQQYGIMGFNFGKMNPKSALRMLKGKMGIVDEKIHNKKMLFD
Ga0211734_112628176F084133AGGAMFNNKIDGMGQAPNVNFGLKDTQSVQCTECQGAVFQNGVMFRKVSKILAGTDKDALVPINIPYCVNCLEPLDDLLPSELRKQKFSL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.