Scaffold Ga0211734

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_11240728 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020159 Open in IMG/M

Scaffold ID

Ga0211734_11240728 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14365
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (25.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

14365

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (25.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 12
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 12

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F001055	Metagenome / Metatranscriptome	791	Y
F001298	Metagenome / Metatranscriptome	727	Y
F001725	Metagenome / Metatranscriptome	645	Y
F001923	Metagenome / Metatranscriptome	617	Y
F003583	Metagenome / Metatranscriptome	478	Y
F003714	Metagenome / Metatranscriptome	472	Y
F028807	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1124072814	F028807	N/A	MNGVSLADPYAFLKAVFPQWNGEPAASNGAYVLVTFDAPQTPVDLGPLVKVEVFDPNASQLP
Ga0211734_1124072818	F001923	N/A	VSAAPFNPEDIPKEVKDGLVASILGGLAMTARLLLSTEPVSLGWVVRRVCAAAITAALVGYAIQEHIQSPGLRMGVVGAAGYAAPECLDYLLKYVKARGEKEVAAVVGKPKKPHGKGKAIKPAAKRGK
Ga0211734_1124072819	F003583	AGAAG	MGKAKPSSQQPNGGSNLVLAVCLLTAFAGLSAFASAYIAGVVLDLLQSRDALVMIVTDAGIKSDSVSVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFIRSRRQSVS
Ga0211734_1124072821	F003714	N/A	MPNAHHPYTDHLTFAGRPIPLKRPMAVYAANRLQAILPQIAALNAAGKSQADAAAALETTVCTLRMWLDITGTTWVNLKRRGPYKRNNHA
Ga0211734_1124072824	F000957	N/A	MRHLIEEIFEVNERVMCGDLVSAKAAIASTRMKKLLNHYHEALHEDGASKVSLQAYVAAGGWVGIQYSYEMDGFEVAGSQVPRRV
Ga0211734_112407283	F001298	GAG	MGVFFVPYQFGQIQMSLYSEFLADAKEMIADFGVAGSANSGAITFSCLISDPAVATVLESGGYMERTQYSVRLPAVTASWTKPDGSTGASAAIIASGAVIPSLAQGKKIVAGGKTVRITTQTYKPGSAWVTLLVIDDNQ
Ga0211734_112407285	F001055	N/A	MGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDSNATQTLPKAVVLCDSARAPGDLPEGEGNYSCSVRITLFSNADDTTLADHRARCAALSGNMRDLTSIKAAFVTSTDATCYDVTIGSEDEGIDERSWATAFSFELLVVLPAA
Ga0211734_112407286	F001725	N/A	MAAITNGTSCVYGIAGTVTNLFVQSYSLSSSFNSEAMVVDETGITKTHRLDDRKSEITIEGIAKTTDMPTLGAALAFTVNTKSAYPTGTASISFNGVITKVDDKGSNKGFTAVTITAIDYEGITPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211734_11240728

Overview

Ecosystem & Geography

Associated Families

Sequences