Scaffold Ga0211734_11122090

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11122090
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3509
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F012040	Metagenome / Metatranscriptome	284	N
F015354	Metagenome / Metatranscriptome	255	Y
F026825	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_111220902	F001272	N/A	MIKIELTTEQANNLLQLIDISIKAGGFQNAKVGVPLAEIILEAAKANAPQQEAAN
Ga0211734_111220903	F026825	N/A	MTDHHAFIRDISIGVGGPAIGILGNAVFSDPHLKTASLALGAIAALLTCAVKAVELYRKLKNHK
Ga0211734_111220904	F015354	N/A	MNPNIASLIRHILTAAGGFIVAKGLASADQVSELAGAAVSISGVAWSIYNNKKIAKSDAPKAE
Ga0211734_111220907	F012040	N/A	MINWLRGSKKESPKNLLELPDINLSDWQTDGQQAELAQIFSMPVLRMALRIVAESMPVPMPSHGSKESDIIFAAGVTAGYAHCLENLRKLAVTETAKEPEATFDKQY