Scaffold Ga0211734_11108698

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11108698
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4269
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F007112	Metagenome	357	Y
F011077	Metagenome / Metatranscriptome	295	Y
F020851	Metagenome / Metatranscriptome	221	Y
F044490	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_111086981	F020851	AGCAGG	MEDIVDLAISMAEIDTGMQLPLEEREAMKQRILARLEDINQ
Ga0211734_111086982	F011077	AGGA	MDNNLTWAEEELNLWKGWTYSAEKNRYYFNDVGNESLAAFWADEFLNQAYL
Ga0211734_111086984	F044490	AGG	MRIRVLRASREEKVAVAIGRLLSDFHLDLEKVGFYIAKSLPYTVYRRALEVLASAEFQENEVEQNRIGYRNDRLH
Ga0211734_111086986	F006844	AGGAG	MAIWEVEVIFEPTGDYMNFVYETDNEDEDGIFTEIANQLSIVPNLVEKNEEE
Ga0211734_111086987	F007112	AGGAG	MHTLHYIAVEAENKQEAFDKVVVSLSKEDGYSPADWSDWHVVGGGRWSTNANKKSENNLMGGYNDDPTDVLGFSEDKEKFQETVSGIAKWKAEAVNRAIKTIDTDRFISDLVDYASEGGRTSNHFDGNKLMNIYAIKEAAEMLMGSWIPDSGFYDLEENIAEVTYLKERLDKPEQASLQYLVPVDFHF