Scaffold Ga0211734_11090304

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11090304
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2024
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F036238	Metagenome	170	Y
F082676	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_110903041	F082676	AGGA	MPNWVYNTLTIQGPKNEIDSIKDKLNQPFKVLHDSWNMKTGEMEVTESVYSAPVFSFWNI
Ga0211734_110903042	F036238	GGAG	MLYGHWAGHDMLGNLASAVEAARSRWKDESYATRIVVSHLVGDQWHETTGWGLTVNSILDNEHKIPLIDWSTGTFSLHEEAPWSESTEYKVRGMQDEPIFKMGLDAFVDKYARATV
Ga0211734_110903044	F001043	GGAG	MSDYKDGFNDGYKFAREEIIEKLSEIDITDIDSWILDRLSEMMEGGKL
Ga0211734_110903045	F000311	GGAG	MYFELTAPDKLSFEMAYWDAQIMGLDPQVLSALTFNVGTGSIEKVSRIRDKHNLIESYTSEYEPTGYTGR