Scaffold Ga0211734_11044521

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_11044521
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2236
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F020863	Metagenome	221	Y
F026864	Metagenome	196	Y
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_110445212	F026864	AGGAGG	MSEQEKMAQFVFTVVIAPANKQYDVELWDFAGTEPKQLATGGGSNWRTALGEALSKIELPTDKVEKTINDLVKEGVEDEGV
Ga0211734_110445213	F005558	AGGAGG	MATNQDSISWAELAQLTHATQVERFNWCMCEDNEGQENPYNDCPKEVE
Ga0211734_110445215	F073256	GGAGG	MKLQEVDTIQDLKEWVETNMPGARLTEDSAGNIVIHTGLISTMGGYLHEGGGENGE
Ga0211734_110445217	F020863	AGGGGG	MQTTMEEIRNLVATLEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAFRIHFSGGSKYGSGHYEPRGFSDYLGGSKAEAAQSLRKLIAGIHTGLLIAEKKEVKA