Scaffold Ga0211734_10984221

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10984221
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16250
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024060	Metagenome	207	Y
F031788	Metagenome / Metatranscriptome	181	Y
F101135	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1098422122	F101135	GGAG	MKDIEIEQYSDGWTVKVDGKRFRWDHNDEDMGTLGIKKLLEYLGHNVTVEECY
Ga0211734_109842213	F031788	N/A	MTITYKPMDGFPNVKMPVLHTVVYAYTADHVQAFYQRSYKDHLVDEWLKKNCRSPYYHSPGYLKEKFIQFEDDQEAMLFALRWA
Ga0211734_1098422131	F024060	AGGAG	MIKQFVQVSAHKDSNNFAHCSNLSLMADQNMTAKQALRYLQVMADEYALNGYSIEWIREDFDAVYEEMYGDLFV