Scaffold Ga0211734_10982966

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10982966
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3514
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027781	Metagenome / Metatranscriptome	193	Y
F037595	Metagenome	167	Y
F080878	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_109829662	F027781	AGGAG	MELHKPDHLISLASSAVLVSVDVNVWSATKQDRIISNEVTASKNADKSAGRYVKNLLADHPRHKAIVNYRQTIYNWVKRRTYRWNNSQDLLPSVDMPKFKQEYHEHQAAFNTLLSDFIVAYDSIVSDMAFKQGDMFDRNDYPAKEQLVSKFGVQLFVSEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDDVGIDDNTGETKTKKRKIYDTTILKAKEMCDTFKGFNLSGDPELEQARASLERALSGVTAEDIRESDAVRHAVKEDIDDILGKFSSFKCV
Ga0211734_109829663	F037595	GGAGG	MGYRSDVAYTIRFVDDHDTNNDQSFYTFLMEAKADPRCAIALAEVEIDHKRKAFRFIATDVKWYESYPDVDSHNALFDKAQEWVKEVHAQALHCTMGAIFSRIGENADDIEEIAVGDYDWEWIQIKREIITDWS
Ga0211734_109829666	F080878	AGGAG	MGKVKVHYAPLALDLHDQQQEEQQETSRSMFLLLCNGKPLALYDHRDTAEYEMHICLQGDMHEGVENKYRIKTMGVVTHAYEEN