NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10955766

Scaffold Ga0211734_10955766


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10955766 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1068
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038086Metagenome166N
F070856Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_109557661F038086GAGMATTTISNISNPVSIQDIKPTKTLSNIKPFNSTASNVALGTVLAIATLTNTVAVSDLKPIPSNFQKVDYAKVITPASVLPFRLTLTNIGIEGYNPANPPGIGIQIIGFSNYIL
Ga0211734_109557662F070856N/AMAQYRNPDESAISPQPTAPATYNLGNIPPLVNWTVVIGDSASFRIYVEDDLGNELDYTNDESGDITGWDIKADFRRYSDNIGTDLIFSITPYATVFDDPGEFTVTISPEQSKQLRTGDVFDVQLTDANRVWTVCQGEMIMIGEVTDQS
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