NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10914608

Scaffold Ga0211734_10914608


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10914608 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6285
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048952Metagenome / Metatranscriptome147N
F057319Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1091460812F048952AGGAMIRPGNKSDLGTIAAIGGVILFWPLIKSLVNLTTATAQATANVLTPNDQLLAQAAPGIYAELMKRPPLPLPTGGMPTLRRFLSDQECAALANMIEENLGGTSSDWETIRETFRGLTLSVSDQRMIYAQFGFRREWWAVAGGGKKNLFQWFRDNLTPSELSIARQIWRSANIVPAL
Ga0211734_109146088F057319N/AMNLKEHQAKIQKLPYKCFSLRSAEGKRLISANTDTQPSKLPAIIAALEDMPPGSYVIRCSNNSKDGYDYPIVTQLTNAPATNVLNSQASADDLKTAERLGRLESENAFLRQQLADAGERIQALEADALEALAEDPDEDDFLAEQPPSAKEQLLEAIAPIIPALADRALSLVDRFLNKPSAQPLAEAPRPAAPVIDYERLANMVSQKLMEAQQYDDEPVS
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