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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020159 Open in IMG/M |
| Scaffold ID | Ga0211734_10793168 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | SciLifeLab |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32463 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (90.48%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erken, Sweden | |||||||
| Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014845 | Metagenome / Metatranscriptome | 259 | Y |
| F034856 | Metagenome / Metatranscriptome | 173 | Y |
| F047017 | Metagenome | 150 | Y |
| F057318 | Metagenome / Metatranscriptome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211734_1079316820 | F057318 | GGAGG | MAKEAKNNFQVSATGGAGTSGQPARYAAGIDNAEDFYEMQTAAKMQGQNPAFSNVPSPSSQRPFRGDSAQKLVPLNAPTQRPDEDVRTGGSMNTESMYANDATATGEDADRMRAALPYLSVMAELPQTSNAFRNYVRYLKSVL |
| Ga0211734_1079316823 | F047017 | AGGAG | MAKPGEGGPLIDDGGNPFAGATTSPSMTTWIVNLLKNVPELKAIYDTVRDPVTGKYLYNAAAIVDLITSSSWYLENGPTVAGNIAARYKFGEKYYQQKIKEFKISISGLATAIGLDMADPDTADYLSSLAETAYLNNWDNDYIENTIISNKDIFGKIQGGAYATAVQDLAAYSNLMGFPMSEQSRADYQRRLIGSTTKEGLRVRATPDDIKREINAKAAQLYPFLSDDFTAGRTLWDVTSVQRKKWADLLEVDEDTLDWNDPLWKDGKIFSMVDEKTGKMVMRPSWDAEKLIKQDERWQYTENATRLYEGYGIGMLNKFGYAAI |
| Ga0211734_1079316827 | F034856 | AGGAGG | MSMYYFTTPTVDETPAGDHILFARIELPRGISVLRLNGVYSSFRYPSQIQTNQAEEYYLGGTKSLINQQTADALTAQGYGAYITPA |
| Ga0211734_1079316829 | F014845 | AGGAGG | MAARKPRKKPVKRVRTVKDESYTELEMYCIWLNEYYHALLKSGFKSDLALAFVMEKSSYPSWVNYRSPSEDEIKRMLDEDDDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |