Scaffold Ga0211734_10721501

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10721501
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113680
• Total Scaffold Genes: 128
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (14.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010082	Metagenome	308	Y
F028540	Metagenome / Metatranscriptome	191	Y
F036664	Metagenome	169	Y
F065704	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1072150115	F010082	N/A	MLSPRLVNCVDCTTAPKLINDIDCRLTILANNQYNNIVFMLNFPYPGDIIGDLLNYKRILVNKVCNPDYASAYTIDMIASRVKVLIHK
Ga0211734_1072150126	F028540	N/A	MNPVFEAWVVIEKLGALCATPGISEDVQKEANEQIKRLLEDVVSPSLTKLSASSAGIITK
Ga0211734_1072150160	F065704	N/A	MGASWFRTQSTGKDIKDAYNKAVERADDEYGHQEGYSGQINCSSGFRDVTKEFKASKKSMSQFMDEAADKLSKHQGAQAICIEEPKGNDNKVKSQVEHVVTPGTKKWVLTYIVYCGSDRIASALTKGDAVKRARDYSEKHQCTTWIKMERRLEKDAHALVAKVTYKKSSTEKEGKWIFFGWASY
Ga0211734_1072150168	F036664	N/A	MTFDELKESIQEEIEWLETTDRDVIQCISIENLEAILSVYFNTEIKLTKEEN