Scaffold Ga0211734_10683121

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10683121
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2890
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F009402	Metagenome	318	Y
F027178	Metagenome	195	Y
F037694	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_106831211	F037694	N/A	MLNKDQAFLINEFIRKNATRNLWEVSDKLYTLLSEIKKLEELPQNNETEIAAA
Ga0211734_106831212	F006546	N/A	MKWKYIGNRAGDATKGEQYIVQADELTEIYMKTQPYPQFVKVYVVQPPSPRKNYMTMRAGDIVKICNPYYDMQHYSHPGFIPVKE
Ga0211734_106831213	F009402	N/A	MKKLDKEFESTGFKYKQIHRENMFAIYERHHISSEKKHYEAIKIQSHNGYEIAGNKIPPSECYPTSNSWGSNGFTCLDKKAAYNRLDRMMKEDVRNKEIANKKAERKKAK
Ga0211734_106831217	F027178	N/A	MKENNMQKYMVMIKDGGKWEEYARLKSKDLAETVLKIVSKDFPAKIVELK