Scaffold Ga0211734_10670768

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10670768
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21245
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (54.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F007312	Metagenome / Metatranscriptome	353	Y
F012571	Metagenome	279	Y
F095373	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1067076813	F095373	GAG	MAAGKLNYIVMYDGLSQVFGCASKKIALESAPPDGYTLQDKKILFITYQPDNKKLCVHKVPDEEVQAAEIKKKKQENE
Ga0211734_1067076828	F012571	AGGA	MENEDDVIGVCSECKSDQPMQYMYDSKFAQNGTPPVCKYCGGVVIITYKENRDRSLRQSDRDRGIS
Ga0211734_1067076831	F004789	AGGAG	MSAKGSYKNPTENPCWVFCTSCNRCQDKGRYTKCNSCSGRYDPEGKIDVHPDDFCDCKNGVLRWRTQEGRLLMTRFKSNPFKGTVKYEKKSEDERDWDSYVKDMREKLNDPNWNPITIVDED
Ga0211734_106707685	F007312	AGGAG	MATFYVGRRPVLKGRTTAAMTNPYTSMTGKAKGNGTYSYYPLYSTSHVLDGAPDNHHTPGTGYHPGSVLLSQLFNGSTLYVHPLSGTFPDGKATYDGARFRPLEFKGLTGNSAFPSGYGHADRTTSYSLYSNYTFDGVTSSEIFVNVGHGPRTTGMAASFELFRPDDVSRVPSASVFTSGYGQANVTSDYGREKVQEWYGVPSAKAL