Scaffold Ga0211734

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_10585049 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020159 Open in IMG/M

Scaffold ID

Ga0211734_10585049 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2670
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

2670

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (91.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 12
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 12

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001460	Metagenome / Metatranscriptome	690	Y
F021535	Metagenome / Metatranscriptome	218	Y
F023344	Metagenome / Metatranscriptome	210	Y
F047059	Metagenome / Metatranscriptome	150	Y
F050377	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_105850491	F021535	N/A	NLLFTLSYEEETGWGGEMEFLRGEVISESEYDNQCRDCDATDQMEYCDNDCGEICSNCNWLGEADLEAVAICQTHKIYLDTKVPEYRKAEA
Ga0211734_1058504911	F050377	AGGA	MTTPTTTREYLKTQGISVGKRGRFSAAALGAISKAAQEGVVFTDKKNVK
Ga0211734_105850492	F023344	AGGCGG	MSEAFTDTVGEHILGAIQVDIEQALFEDWNNANLDEGEAFAEYRFMQFAPDNLKQSYNEYYGYIEGDEFCL
Ga0211734_105850494	F001460	AGG	MLGYEKKDLDTMINAVHDAKLFYLRSPSDLMDKTQLRTDLEMTVSFLQGLWAEGYFD
Ga0211734_105850496	F047059	AGG	MEYMKLHLISLNQDLEDARNNIPLNEDEYFESDAYYMGAIDTMEHILSVASDIMIDNERV
Ga0211734_105850497	F000263	AGG	MNMTAEDIGLPPHLQRMVNAGVSGLDIMHGELKNLLLIAEQDLSSALEQEELSEEAMDSMVRTECEGRLDTLVELYQLTYQLSFAIQERIDLEPLNEA
Ga0211734_105850499	F000441	AGGAGG	MKMSDKYLNDQLSKAQALLWGGSETENIEAHNIIAKLIKDKIEQVEL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211734_10585049

Overview

Ecosystem & Geography

Associated Families

Sequences