Scaffold Ga0211734_10581598

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10581598
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5384
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054683	Metagenome	139	N
F078411	Metagenome	116	N
F085381	Metagenome / Metatranscriptome	111	Y
F085391	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_105815983	F078411	N/A	MDYDKHTNEVLERLQAHQILEVLNTANQAINKALTAIQELEHNATMYLDLRPTREIMDDINALHLHLHFVQSAKTFAKNEIQEIGFYLN
Ga0211734_105815984	F085381	N/A	MKTVLEQLMELNEKLAKLEKEIMSVNTDEVECDGHCGCGCDEPPVEDEGPEFDSAGFSEADRVIDSQYVVTEDEKYVGHVHLTRVELIDFATRLTERVLDSVKKAVTDMDLNADDLVTLELNGWSNTIEVELDNNTLANNVNSEIEDAVNLDADSISDEIDDIFGDMYLERIS
Ga0211734_105815985	F054683	N/A	MNKTESRKALNKLVFEMVTGLGYEVVDDGDGGRVTFIKPNFKNYHDSIDYHKSRFDICVLNDASNEVKEDGNTIEWFIETQRKALDI
Ga0211734_105815989	F085391	N/A	MKFRLDNEAPVTAVEKAIENILVNNGIEREEIQFRGTERYLRIGYWQRINEDIMSQLSGLVTSEIDMYDDDCGYLFSYEIKH