Scaffold Ga0211734

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_10570718 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020159 Open in IMG/M

Scaffold ID

Ga0211734_10570718 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3190
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3190

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 12
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 12

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F002387	Metagenome / Metatranscriptome	565	Y
F003422	Metagenome / Metatranscriptome	487	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_105707182	F003422	N/A	MTNELVSSKYTFVCDPDECDSLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPSTQTKEEKMEETTTPAVTVPDTYNSNLLVTYKVIRGYSDAEYATDKVASIEWDLHNARQNSKHNSVLQGKIDTVKDIIGEAYADSDDQETLRAIAEALGIDLTREVEWSATIEVSGTITLDLLADSDTDVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN
Ga0211734_105707183	F000311	GAG	MYFELTAPDRLSMEMAYWDAQVMGLDPTALTPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTRR
Ga0211734_105707184	F001043	N/A	LKVIHQTTSQQDTQGDNMSDYKDGFDDGYKFAREEMMEKLSEIDINDIDSWILDRLCEMIEGGKL
Ga0211734_105707186	F001125	GGCGG	MGDRANFGFKDSKGDTLYLYGHWAGHNMLANLASAVSAAEPRWQDESYATRIAISNLIGDEWAQETGWGLSINGILDNEHKVPVINWTDKKFTLMEEDLSTVVFSLSLADFVQKYSRLVM
Ga0211734_105707188	F002387	AGGTGG	MASFLEDVNQMVIDAVYQDIAEQLLEDWINNNLDEGQYYADKQFAEMSGDKFIQDEFNKFYELKEGDEGYLC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211734_10570718

Overview

Ecosystem & Geography

Associated Families

Sequences