Scaffold Ga0211734_10558981

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10558981
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16258
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006544	Metagenome / Metatranscriptome	370	Y
F030002	Metagenome / Metatranscriptome	186	Y
F056548	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1055898115	F030002	AGGAGG	MAYRFTTPTVSEGPAGEGRLFEQFRLVRGITVLKIDGDYYELRYPSSEEVEAADEAYIGGYSYEVSEGEKVSLEAAGYTVETI
Ga0211734_1055898116	F056548	GGAG	MRHRQDHPEDVEGCFGCKIIGLQLNPGDSSSQKMVSNKKWDGELEAYRAARAEGIQPAGTSIKKIQEARRASDVMGKAFDANTMGDSKIIQNNTVSKLKEVGAI
Ga0211734_105589817	F006544	AGTAGG	MTTLAAYQGNGWSVIGCDSRASDEGGRPMTIATHKVIENNGYLIAGSGASRGSNILQFGWKPPKPTKLENLDLFMTQKFIPAMRKIFIDAGYDMKEDGDAAAQDSDFIISIHGTIYPIFEDYSWDRDVRGIYYGGSGGDVALGVMEALHIDKAKTPEEAEKIIRRAIEVACMWDIYTSAPIITKIQYAK