NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10440924

Scaffold Ga0211734_10440924


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10440924 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7887
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F004978Metagenome / Metatranscriptome416Y
F010227Metagenome / Metatranscriptome306Y
F010760Metagenome / Metatranscriptome299Y
F019785Metagenome / Metatranscriptome227Y
F020008Metagenome / Metatranscriptome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_1044092412F000652AGAAGGMTGFNSKRAMALDKLKEQGMKKVIVRTELMQELEVPEDWEREHVLDFLGEYQSFRTAFQGVSNEDQTARIIDLGVVIETVEQMGEETYDE
Ga0211734_1044092422F019785AGGAGMAKVNYDSFNSFDLNEACDHFDSSDQKAWKKIRPFVVADGEEYFEVM
Ga0211734_104409243F020008AGGAGMGQYANTVNAYAMSAARARVYNTQNTLQSYGQTSLMLNVSIAKFRRDIEAKKVKFIAKLEKEKIVKMQAEIARLQAKQTA
Ga0211734_104409244F010227AGGAGMQATTFNVSDKLTFAHTDTSEDSISTTYDCNVEVQLAGDSIWDCELEAVTVTSIHIHENFWDEDGDSSIHITVCYNVDGDAEYEGSWRLYTDSGFADAISELLGTDVSYTEQGMQDDGFASMEL
Ga0211734_104409247F010760AGGAGMLDITKIVKTYNGKIGCMCGCLGKYSYTQDGATNHGPGYNVQDSVNERSVKIIAKKVLANPNVEWDGNIAYVEDRVGNRMQAIYFKEQA
Ga0211734_104409249F004978AGGAGMITADTLEALTSYSPQFLTAAARHSGYKGPEFSSCRFLGITNGGQFCYTAVFHVKDGTDSTKIFLTYDHAEDRVIADYHLTEVF
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