Scaffold Ga0211734_10411920

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10411920
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14135
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012098	Metagenome / Metatranscriptome	283	Y
F019997	Metagenome / Metatranscriptome	226	Y
F030064	Metagenome	186	Y
F084140	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1041192014	F030064	AGGAG	VTNTFMTIGIVAGALISLGVLLSPLYKRVKRWGQWMERFMRDWEGEEESPGRDRVSGVMERLNNMDGELSQNGGFTTVKDRVDRLYENQALIMDAFAEMHERLINIENCLMNNPTEEEK
Ga0211734_1041192015	F019997	AGGAG	MDINTLKAAGATWLRASLAAVAALYMSGISDPKTLANAFVAGLLGPAAKFVNPKDPSYGFGSKK
Ga0211734_104119206	F084140	GGAG	MYTIGKLITEWQKSHNKDLLDEVVMGTEVFNAIAKELKKRA
Ga0211734_104119207	F012098	GAGG	MPKVHNIGPKHFVQLIDLPVIWGKKFVVRGWTQEIEEPFRTSEPLLVRLPKYKALAFGKWTGFKTEEDALKSALNTREVTYDDFTEEAGWTAPDSDREESLNDINARLNSVDGAVHVHDWQTYYRMAEESQQRPS