NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10355231

Scaffold Ga0211734_10355231


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10355231 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12191
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002045Metagenome / Metatranscriptome599Y
F061835Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_103552317F002045N/AMDKYIKVNRVKNKYIIDIKKIIEEEELSPNDDKTYLKILIFNKIQQAINKKKDIYYIPDFDNDFSIEKLLNLKKILGENDFNVLIFYNEFRKSPEIIDDVFSNLSKFSNSQIIRDY
Ga0211734_103552319F061835N/AMRINRYNDFIKVNEEASPRLPKKEEYWLKKGKSGKKVALYTHDDMDGIFSAIEVKKYLIDNGFEIVKYGILNYSDGWKYTTVDPKLINVVVDFANMPGDERDSMIDYYLDHHGVFTEEEKEKYKSSPVGKSSTASAYEAICLNLGVPQDDLTVSVIRMIDAAKYDEYNVDWKRLLDYNLSDMKKNDNVRLQFAAAFNQMLKRGDHQTLISVIHNCYDASIYAIFNAMKKVYPEHNVFPRTGQKK

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