Basic Information | |
---|---|
Taxon OID | 3300020159 Open in IMG/M |
Scaffold ID | Ga0211734_10343902 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | SciLifeLab |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7682 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (53.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Erken, Sweden | |||||||
Coordinates | Lat. (o) | 59.83763399 | Long. (o) | 18.6203826 | Alt. (m) | Depth (m) | 0 to 12 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006139 | Metagenome / Metatranscriptome | 380 | Y |
F014971 | Metagenome | 258 | Y |
F053986 | Metagenome | 140 | Y |
F062567 | Metagenome | 130 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211734_1034390210 | F006139 | N/A | MDSQILVAVIGGGFLVLVALIGKIGSDNKKDHGQVHQTLGRIEQKIDGHIEGHK |
Ga0211734_1034390211 | F014971 | AGGAG | MTYEEAIAAYPKNEVHIQVDDVVRPMTLAEYEEFIQRQVNAEPIPS |
Ga0211734_103439025 | F062567 | N/A | MKENPDMSEQLEMFTSTIGLGGHKTKVALDHPSVAVRHDAVDTSRKAAEMAKPHAGEQRKKIHFWIKWASKLESKGMTADEISMLLELPAQSVSARINGLHKDGWIIDTGLRRNTRYGRKAIVWAHNFDLKEG |
Ga0211734_103439026 | F053986 | GGAGG | MSEGVAWNQGELSEETRKMVMDSLTTSNHQMAVFSLLEDIARPNHSARKFRDDHLIRGLRNMLIDFQLSGQDDYAETAILAIEALGGQVKPDK |
⦗Top⦘ |