Scaffold Ga0211734

Basic Information
Taxon OID	3300020159 Open in IMG/M
Scaffold ID	Ga0211734_10302822 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020159 Open in IMG/M

Scaffold ID

Ga0211734_10302822 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	103491
Total Scaffold Genes	162 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	117 (72.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

103491

Total Scaffold Genes

162 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

117 (72.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 12
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 12

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007415	Metagenome / Metatranscriptome	351	Y
F010086	Metagenome	308	Y
F046378	Metagenome	151	Y
F054081	Metagenome / Metatranscriptome	140	Y
F091916	Metagenome / Metatranscriptome	107	Y
F095564	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1030282210	F054081	N/A	MKYTTITYIGKTEGYTVRMGAKSYEFEWQKGLGIGRKGDEVHPDHVKKIAKWRDKRGKKIFFLE
Ga0211734_10302822137	F091916	AGGAG	MKYNVDKMIQDHDSMKSWHEEMAKSAAESMQDHIKAAAWHSSQGDIIKAMMNEVPLDPEKKVTSIPAAGSAQTPTSGAGKTAPTKQVPLDPEVKKSDLVAILSEHAAEYGDFDMDVEAIAKFLLND
Ga0211734_10302822139	F046378	AGGAGG	MIMGRVIPDFPYPEKLCPYCNFKLVVVNAIHWHQDPYQFKAVYLDPNPKCPIYDEEALQAYARIYYTSEDAFNYFRDVQIPVQRWSKEELYSIYQ
Ga0211734_10302822146	F095564	N/A	MSDDLIKHKSIYIPQRAAGVCIWIKEDGLPLSDSDGNLLSAYGLVDDKDIENKVAEAARYWTGTSAGVARWIPGARKISASERDDQAERLSNGLIADPYEDFFDNYFAHKRSM
Ga0211734_10302822158	F007415	AGG	MPRKYPYYPAFDGKKAGAGVEWFVMACGRRWKATNMGIYSPRLMRNSHTAGKKIGDPGMEKWLSVHATGAACDIGYPDRKTGLAMWEWFITHTKELGIVEIHDYAFDSNAKDGKPGYGRGYRCSRGEGMAGVKVYNEKENAGSFGGQWLHLEFEKEVAEDAAKMEAAWKAIPKPGA
Ga0211734_1030282261	F010086	N/A	MAICKFCEQEFIEERFEAGYDYCLEEKCNRMGLDEREREFRKVYTPALLHKCNYFWVRKDELKSLNTRADIIDGYGDQNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211734_10302822

Overview

Ecosystem & Geography

Associated Families

Sequences