Scaffold Ga0211734_10226407

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10226407
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2544
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003308	Metagenome / Metatranscriptome	494	Y
F005088	Metagenome / Metatranscriptome	412	Y
F006789	Metagenome / Metatranscriptome	364	Y
F027844	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_102264072	F005088	GGA	VGRGSFGYLIAQIAVETGIAPQYLLDLDNVMFQNVLKVLGDRAKAVQDANRGRKRSTG
Ga0211734_102264073	F027844	AGG	MAKLKITRADGSVTEHKITPRIEYAFELNYKKGFHKAFRDDEMQTMVYWLAWECLRTSGEVVKPFGADFLETLAKVEVLDDDPLE
Ga0211734_102264076	F006789	GGAG	MALTDEDKKFLIKIGQELPIEIKETKKQKETPTETPTLQKEE
Ga0211734_102264078	F003308	N/A	ATLKASLGVGTLYDSYTWIEDTCQAAQDLINGFLWFDSAPVVGTALVSNVATVMIANPGLFTTGQTVTVAGAGATFNGSYTITSTLPFSSGSTSLLPAFNLQLNYYQYPQGYSFIQYAKVAANQNFRRVVPSGTMTGEDTKTASYANTPAINAAALMLAENIWTSRFSTQNGGVSVDGYSPSPFKMSNTLMASIRGLLAPYLSPNAMVG