NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10205125

Scaffold Ga0211734_10205125


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10205125 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1430
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013886Metagenome / Metatranscriptome267N
F024308Metagenome / Metatranscriptome206N
F024548Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_102051251F024548N/AVCMNSADNVVELSDSDIKKYTKLKEGTKIEVDDLVHVYDNTYVKLSKGNLVCKENVNKFNTILRKK
Ga0211734_102051254F013886N/AMNELTKPNAFAFKARVGESQEIQLCICIRENDKWMENEIFSVPEGHPELSPYIDEQLFNIVFIGYERDENKEGFWITNQNSYYMKSDTILTEDLFNSGEFFKTVEKGYQSFYEQSITSEREGKQTSTSEQEKL
Ga0211734_102051255F024308N/AVKKLILTKLEYDFLTDCLEKLEKHTDDSPADSKWLEKMEQTRRLYELEMDHFNIKKYGEPSTKYQMVKWLLTKVKTKSLDF

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