Scaffold Ga0211734_10192914

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10192914
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1480
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011756	Metagenome / Metatranscriptome	287	Y
F022400	Metagenome	214	Y
F024719	Metagenome / Metatranscriptome	204	Y
F034906	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_101929141	F022400	AGG	MRRSITRSSHRTTLRLVGTGEGESGSAYSPFGPVRAGLITMQRTNEDQVLTELLNSLERKIVELNTKSYEALNTLRLGINHRAEPTISSLSTTTTSVVEYNS
Ga0211734_101929142	F034906	GGAG	MKNTQRLKGAADQAVRQRNYRRARERALTRLANDYPDLYRSYLEEEKIADEDMGKKWLDLDGNTSLTDTRTR
Ga0211734_101929143	F024719	AGGAGG	VNEVIQLPRRGKITVVFYEVSDPQGIAIWGGESPREALNWYRRSPTGSKIWVSQYEADEEDAKLVLDLIEITPIVLATILDSVDRWS
Ga0211734_101929145	F011756	AGGTGG	MSEPRYLMGDEYALTGGYEELINCLVCSKEYDRVEYRSNTCSDCEDEMIKRVRA