NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10186294

Scaffold Ga0211734_10186294


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10186294 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4377
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018174Metagenome / Metatranscriptome236N
F030379Metagenome / Metatranscriptome185N
F103224Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_101862942F018174N/AMSNTKKTDRKNKTNLTVTWPSNDTYFGVSELTNLNSDFIAITLRVRLKNALDEGVVTQIGTVHGGKGRPKLAFAMIPVTETAVTAARAAGVVLVDKYNTVNVLDVKAEAETTEHVETATKTDAVVA
Ga0211734_101862943F103224N/AMTFKKPDPTQKIYHYIEIDSTTIALYDSLMDQPISYGSKVKIQVDINKLLPKDITIYYYTLKQFIKLKPIKPYIGKK
Ga0211734_101862945F030379N/AMIVNFIKDNRFQTFINKLAFNSLNQTDSTYLDDSPNGIFDGDIGTILIKDGKDVLYRTNNDTEFTNISSYFMTAVDAKSGLLTSGINQKATWIKNSSSTDKTWKFLGYTCPFDSTCAPCPIPYTAY
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