Scaffold Ga0211734_10136380

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10136380
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6158
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014142	Metagenome / Metatranscriptome	265	Y
F024314	Metagenome / Metatranscriptome	206	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1013638011	F024314	N/A	MNSDQQQLTPEQAQAILIFQIEQKLRFVIAKQVEEKFHGSYHGASHDIAQFIRNMS
Ga0211734_101363806	F014142	AGG	MNITTITIEPSHAMASSNTKDNNIFRLANGNYISRSAYVFMVADNSLISHKHLTPNESLWVFANRKAI
Ga0211734_101363808	F093845	AGGAG	MIQVTLTTTTGATKGMRFDTKNDVLAFIEKMRGALPIGTAVNVDAPLIGIHSGWIQGKNLEKV