Scaffold Ga0211734_10133898

Overview

Basic Information

• Taxon OID: 3300020159
• Scaffold ID: Ga0211734_10133898
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3976
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 0 to 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010832	Metagenome / Metatranscriptome	298	Y
F013404	Metagenome	271	Y
F029676	Metagenome	187	Y
F034568	Metagenome	174	Y
F041003	Metagenome	160	N
F082589	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211734_1013389811	F029676	GAGG	MGHLNKTFYNYMTTLDAWDEYLELIRDDEHFAEQWADTDNDFEDWCESYDIVLVDTRERANQLEEAQLE
Ga0211734_1013389812	F013404	N/A	MLISYQNVLKLTLTIINMTITITDAVKKLDETIARQKSIANKLVEEHKQLQEALAIVCSNADEDCPLEYRKEHFRSAITDGYDLLKKVGYFKNKKRVHKWDI
Ga0211734_101338984	F082589	GGA	LVSPLKSQQKENVMQNDKIYEVASDLYFYFIDLYGAREQCVIENDDYSENTELGRELYYQIEDELINNVQPTKN
Ga0211734_101338985	F041003	GGA	MKAWTPPTDHLDPPKPPRHYKYVWLRFDIKTKKFKYPLVRHKQLKNRKRFPFIYIKHYGKCVGIEGLTLAKIKI
Ga0211734_101338986	F034568	GAG	MEVEEYGVKKSWDGWRTFAYVRDGTPMGLMPITWANELFKTKQQANVFIKDLATKYGWKK
Ga0211734_101338987	F010832	AGGAG	MRDIKDVVAWLEEELAHFEMAVEQLNYVSKADEIRYRMAQELLAWTLGYKYNDKFSVSRVPSEVEQDSKAFGSRI