NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_10065756

Scaffold Ga0211734_10065756


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_10065756 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1312
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F009005Metagenome / Metatranscriptome324Y
F027513Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0211734_100657561F009005N/AMLTENEMIVRARLIGMDEELVSYAKQIQRQLETDGDRADWVDCLEMAYNELILN
Ga0211734_100657562F027513N/AVHTEKEQSKEKKTHKNTAVKPGEQVASNRAMHNDMRLMENADGEYDAVVIRGDRYALIRGEYIPIGSNFHYPKVWGRKYAATKLVQTIMDDKRKQIEDAERELIKLQKCLDKVNGWSDTD
Ga0211734_100657563F000785N/AMRVSNKTKGMRFDCNRLWNWAHEKLGESKCQAIAFYWDMNPEAECGYYDWEKTIWINLAQCKRMISVQKTLLHEWTHAQQVWRWYNHYQIKYGYKNNPYEIEARENEKLVKRAYRKRTK
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