Scaffold Ga0194038_1007716

Overview

Basic Information

• Taxon OID: 3300020158
• Scaffold ID: Ga0194038_1007716
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4041
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021938	Metagenome / Metatranscriptome	216	Y
F035159	Metagenome	172	Y
F036591	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194038_10077161	F036591	N/A	ADMDMQLKVAQMKMMTERNTQVLLAHINNGAKIEVARIGAAEDDGAQAYMNEEEFARAQEHPLQPIASAIGQGNQQMAQAISALVDTINAQHNRPKTVVRGPDGKITGVQ
Ga0194038_10077163	F035159	GGCGG	MFSTAFQANAFQNDAFQIVITPTNVKNGGDDAPWTREELKRLKGIQKKLRLAEAKRIAALKADQEARKQTIADLVDPKPVANKQQTKVQSNQEVSVDIPSNLANIDRYIANLVTQQQDLQNAVLIRAAKVRLEQELAILETKRQAELDDEEALLALLL
Ga0194038_10077165	F021938	AGGAG	MVCPKCGYSEGNHIEAKKTDEEFFLEWWTPTIGEEAAKASWQDKVAMKTREAPMVMSDIEGHISMADGTWVSSRSKHRENLKRNHCIELGNDVPMQQKAPEMSRQSQEARKRQIAELAYAKL