Scaffold Ga0194038_1005120

Overview

Basic Information

• Taxon OID: 3300020158
• Scaffold ID: Ga0194038_1005120
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5147
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F017287	Metagenome	241	Y
F027764	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194038_100512011	F007166	GGA	MSQLNQLMIEMEERLEIALDNMEFGTELAQDDIDVIRAACGKPNNKRNVLLQNVFEDFGGIFGNPLESFPTIRGAK
Ga0194038_10051202	F027764	AGG	MDIRIEIVKEHEDGSADALVHFDKEGLGILVEEGILSILRKYIKQEKNDSKRKKRKSND
Ga0194038_10051206	F017287	AGG	MDTYIRRVFEAEAPCDKCTQKTDCQEFELACRAFSYYVLHGTFHAHTARMPTHNLFNKIFKEDDKALKTYMKSLAAKEGGICG