Scaffold Ga0194038_1001352

Overview

Basic Information

• Taxon OID: 3300020158
• Scaffold ID: Ga0194038_1001352
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10585
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007848	Metagenome	343	Y
F011648	Metagenome / Metatranscriptome	288	Y
F045569	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194038_100135215	F045569	N/A	MEIDPVKFGVTWQKVENMEYEVAELRKDVKQLLELANKGRGGLWAGMMVISAVSAFIGFISQYLTSK
Ga0194038_10013523	F011648	AGGAG	MSEQEQDFQSFQQHLERIFKDLDDGVFLTADEIGDLRYACGLPSPVTKNPVLKAVFDDFSNIFRSKQ
Ga0194038_10013527	F007848	N/A	MPVYKCLVKEKIMKDFIGSCLLGALLGCMFAYGSAKAQSYPITNAQGYNVGTVQIQGNTAQFVNPMGYTTQTATIYPNQVIITTPSGYTQSVIGNTGYTTPPSPPTPMSPRVMQ