NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0194038_1000116

Scaffold Ga0194038_1000116


Overview

Basic Information
Taxon OID3300020158 Open in IMG/M
Scaffold IDGa0194038_1000116 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34581
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (78.95%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F012318Metagenome / Metatranscriptome281Y
F017967Metagenome237Y
F021910Metagenome216Y
F028086Metagenome192Y
F059611Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0194038_100011626F012318AGGAGMAYDSAFSPFGPTYQVGTAAIQVKASNNTYPTSYRIMNITSGIVRFAWAPQEPSDATVTPVATTPTTAGIPYVMSIPANGVAVFSGIPPNAWFISNTATSLEITPGEGKL
Ga0194038_100011646F028086GGAMTSEDIPFAGNVKVPSDDCEEAFFAVYPDFFYEGSTALNLWTQAWQAALDHIENKKPLIQLI
Ga0194038_100011649F002539AGGAGGMNHHIWTASGTDITLRWRKAGWIPPSEIQAYKDKWKYFQELPLRSLDAQGKIEYEGTLKLNKIFRIK
Ga0194038_100011650F017967GGAMAIKWYVKAPVSEYVAQDGTSKKRYATVGIVTETKKGDLMLKLEMIPLLGLKEGSFWAYLNVPEDKVDTPKSSNLADLESDIPF
Ga0194038_100011656F021910N/AMGRSNSFRYSFRRNVRFWSLIMGINRADAYYEPEDYDDRSDEIEERTWQLLKVGGKFDYRTSSAISEALSEMGADDSQALQDAIDTGDFAMLGRKIISMAMEYMESHAKEVAEFEIND
Ga0194038_10001167F059611AGGAMKDFSQPFLDAKRLLDEYYKAMIAQDKATAYQIANSFVETALKLEDIAHAD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.