Scaffold Ga0194038_1000112

Overview

Basic Information

• Taxon OID: 3300020158
• Scaffold ID: Ga0194038_1000112
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-6m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34854
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F006696	Metagenome	366	Y
F010821	Metagenome	298	Y
F023542	Metagenome	209	Y
F097185	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194038_100011234	F000961	N/A	MNAPEIDPVRYGVLWQKVQDYERRFDEMSAKIDKLETNIDKLVEIANQGKGSFYAGMVMVSAIGSVLGYLSHWVGKN
Ga0194038_100011242	F097185	AGGAG	MTEKQKAYLHLIILPFVISAAFEFCPPWVYWPICLLGCIAWFGSCVILSEKDTV
Ga0194038_100011250	F006696	GGA	MRFLKFLKDYYRDLTPAKVIQQELSQAHLDRLEAEAAVEYAQAVLDLNMARIERLNTRLKEYK
Ga0194038_100011256	F010821	AGGAGG	MTDFTFSPSDFNATTITVVANTPDAFEYLAERYGFACISINVRKSAAPELAESFEFQGLSYQ
Ga0194038_100011257	F023542	N/A	MDILEIAINHAGGTGRLAYLLDVKQSVVSNWRRRGVPKAWEQVLRYKYKKQIAEAGKVV