Scaffold Ga0194049_1005609

Overview

Basic Information

• Taxon OID: 3300020157
• Scaffold ID: Ga0194049_1005609
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3391
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.69
  • Long. (^o): -93.718

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F006264	Metagenome / Metatranscriptome	377	Y
F009598	Metagenome / Metatranscriptome	315	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194049_10056091	F009598	N/A	MLDRKNIIVEYIEAPQGDKGVVFQVAHEIYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPCVTPGVDYATAIITKCLMPNGKVNFEFERFSELDNIQSAQATEMVKYMINSKNDPYQIIRDWAQDSLLHKTGVVMVSPLRKPLIQYK
Ga0194049_10056093	F006264	N/A	VAITEDYSVVFRQKLSGQVEVCARKTLEWLQKDLQGNKELTPQEVYYLASAAGLLLELRDLYGKE
Ga0194049_10056094	F001059	AGGA	MATYDIASLKHDLPTAKELAQFIYDKVGLSLDFIGKPKDDQYVVAKAALEGKKFPAEYESDVNPYLDRKELVPVDELKTMPPRDKDLPDLESKVHYFGATNMPHPTEPGSDKKVQIDFVKYDNGVITFQITGPVEQISVGSRLNKYGQQTPEKYSWSDPRSPETVLRRADGTFTTKGRGLYAYCVGEKGGGIWPLIDKQMLDIVAKNITNPWQ