NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194049_1002300

Scaffold Ga0194049_1002300


Overview

Basic Information
Taxon OID3300020157 Open in IMG/M
Scaffold IDGa0194049_1002300 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5706
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (30.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.69Long. (o)-93.718Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039455Metagenome163Y
F091224Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0194049_100230010F039455GAGMARVHVNTGRYGDIICFLPVLLNEYKETGVKARLVISKDYASILDGVSYVEPLVFDGPFEDVSGAIAFAKTFSDDVKTSQVVGISDVIVSQVYGNSHAPKIICDSFQKDAWKLADKLELWPSQPPLVFDKRDKKREKRLYKYIPTLKPWIVVSTGGISSPFPYSDLLWEILNHSLKEFHIVDLAKIKAERMYDLLGIMDHPNTAAMILTDSGNLHLSYATKKPVHALVADSPTLWHGAAWRPSYASYTRYKNFPRDVTRILDLIRNPPVKPKQENIIHVYQRMPWATGKEKRRNEIAAKTWDKVGWVDLGLDDSCFVRNSSNVIPNETKNIPMIKDMLRMACIGRNDKDVLVLTNSDTCVSSNLLEKLCGQMPAYAYRRDFDNIDKPISDDNICLGKMYAGSDLFVFRVGWWRRNHALFPDMVLGRHSWDRILRQLIKLSEGREIENCIYHERHPSAWENPRNLNNDLSNLRNAKLARQWLQDRKIPLEELELLNYEGKFDKQSKKR
Ga0194049_10023007F091224N/AMRSSIDNILNEIGLDTPDLAPMNRKEAIEMGLVKLIEKPKKCACGKSAYTSKSKCDSAIKHRLSAGFGGMGMLRAYECDIVRGNFHMSSINNKKKS
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