Scaffold Ga0194049

Basic Information
Taxon OID	3300020157 Open in IMG/M
Scaffold ID	Ga0194049_1001063 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020157 Open in IMG/M

Scaffold ID

Ga0194049_1001063 Open in IMG/M

Source Dataset Name

Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8831
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

8831

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (25.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.69	Long. (^o)	-93.718	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Ontario

Coordinates

Lat. (^o)

49.69

Long. (^o)

-93.718

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F048735	Metagenome	147	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0194049_10010634	F030662	N/A	MRLKNPNDAIPGGLWYQYTDDKEKTYRVNGMDLTFGRQFAQKVKNDMINKNVDVPENLEYLIEQQICKRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPSCQKRREILNQVIG
Ga0194049_10010635	F048735	N/A	MEYNGFNLRPPEDTTYGLSFLETSPQFMRELIAYRLTRGEFGRRERIKMGIKLENTTLKNPAQHMINCFQLIFEDDVLLHSQGIVNNYAIDIVDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPNCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQSKYGKDSSIGNLVEYRRMIVFESIDTKDSERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVTRYTHKWTTRTGVALHLSGEDSPNFKVPDAIIPPFDRFLTIEGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIAWEPTWSDRTRVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTKEYSSSVGDVFEESIAMQLVKDCLEYGVHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTDRKISSLDKRTAKEAYDRRVTESWFQVHTAMSTKSLVGIDVEKHSSIVNELCSRLYFHKGRKVAVEKKLDMKKRIKKSPDLADSLTYAVEMLSKAGLEFTFEDDAKESLDILEIRDWEDRLIHSKNNSQEEVDNDDWGYGSSSVDPDGF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194049_1001063

Overview

Ecosystem & Geography

Associated Families

Sequences