Scaffold Ga0194049_1000869

Overview

Basic Information

• Taxon OID: 3300020157
• Scaffold ID: Ga0194049_1000869
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9984
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (43.48%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.69
  • Long. (^o): -93.718

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194049_100086910	F003748	N/A	MFKVNRQDGAAQFINTEGDFVVTVSKVEEALDNKGREVCKVTFKTDDGSSTSDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGKKGSFGEFIKAMTGLKLIIVARFEEYVDQAGEKKKIIRVKNMKAVAPVAAEDNLPY
Ga0194049_100086916	F002227	N/A	MKLTIQSTQGAQVIVDLFNAIITGNEAEGATPLSIYDEDKHICSLVGKSGEQILELIIEREVGDKLQEVGHPAPSPKSL