Scaffold Ga0194049_1000097

Overview

Basic Information

• Taxon OID: 3300020157
• Scaffold ID: Ga0194049_1000097
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34216
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (29.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.69
  • Long. (^o): -93.718

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F038058	Metagenome	166	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194049_100009713	F048735	N/A	MIYNGLCLDTPKDTTYGIPYFESSPQFIRELMAYVYTRGEFGRRERIKRGIRIEDTDLKNPTQHMINCFNLIYGNDVLLQSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPNVTSTYVASTSLDASEDRLWGKVCTLYRIAMRNIQAQYKGATIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPKGGEGKRAVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPAATANNPHTELCQPDDPMEWESVTRYTKKWRTRTGVALHLSGEDSPNFKLPDAEIPPFDRFLTIQGEANTLKRCYGNKNALEYWRNVYGWWPDNSVELTIFSKAFIQGCNLNYEPIWSGRTKVVCGFDPAFTAGGDRCAATFCRMGQNDTGRSIGFYLGTREYSSSVGDVFEESIAIQLVKDCIEYGVHPRDFGLDISGDGGKMMRAIIIEWSKYHPEAMFLFPISSMGMPTDRKISNLDQRTCKEAYDRLVTEYWFAVHTAMSTRSLVGIDVDKHGIMINELCSRLYTHKGRKVAVEKKLDMKHRLKKSPDLADSFTYAVQMLRKAGLEFNFEEETVSLDIQEISDWENKLIHSKNNVEEEQMEEDWGYGGRGVDDDGF
Ga0194049_100009714	F030662	N/A	MRLKDRNGPIPSGLWYEYSDDKGTKYRVNGMELTYGASFTNKVKSDMQNNNVQVPDNLDYLIEQQICGRIAGQYCWQEAGDKVANVIHSFANLGDRVAASLGINANLEKTAKGCTSCQKRRQAMNQTLG
Ga0194049_100009719	F055388	N/A	MAAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPNQPWEQVQSGRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWIPISNGQSLVSCATPDDQMFIVQPFEGTNEGSFNMGYVYVKMAASSLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNVNDPTTWPRLVRVLPYYPVTTELGCKYIQNPAFQYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACTLSPNYAPQYTPDCYACNSTVSQPI
Ga0194049_100009736	F038058	N/A	MASHGVQYTVDKTERGIVSDSVTPQPMQRVQIKGDIPTIRAYKDARTARIKSIGESCQSAFSVGGPANETAMGKGTPFNADWI