NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194049_1000073

Scaffold Ga0194049_1000073


Overview

Basic Information
Taxon OID3300020157 Open in IMG/M
Scaffold IDGa0194049_1000073 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L224-25m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38553
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (35.29%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.69Long. (o)-93.718Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001272Metagenome / Metatranscriptome733Y
F015720Metagenome / Metatranscriptome252Y
F028149Metagenome / Metatranscriptome192N
F034904Metagenome / Metatranscriptome173N
F036666Metagenome / Metatranscriptome169N
F042808Metagenome / Metatranscriptome157N
F063494Metagenome / Metatranscriptome129N
F072266Metagenome / Metatranscriptome121N
F078232Metagenome / Metatranscriptome116N
F085631Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0194049_100007312F001272N/AMIKIELSTEQVNSLLQLIDIAVKAGGVANARAALPLVDLIVAAAQPKPE
Ga0194049_100007313F015720N/AMKNTKTTLAGLGAILIAVGGALRAAFDADPSTNIDIASTIAAVTAGIGLIMAKDAEKTPVVPPV
Ga0194049_100007317F072266N/AMTPKQEFQKNQQRLNELKRLLDNQDLQAALLVAFNNFCWNLPASENPQHGWNANCRRQGAKALIDELNGLAEMRKDKPTTTQNLE
Ga0194049_100007319F036666N/AMLNQGYQAVARAVERVKNTAQGVRILAEWLGDGGIPVDRSVAQHRLDTCLHCLHNKPTKPDAIEKTVGEVIIEQEQLRHDMAMILQGESNAGTCEVCGCYLKLKVWVPLSYLGDREMPDKCWISQERKAI
Ga0194049_100007323F042808N/AMVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTKLLTFNDPTVVYNGGYYNAAVQAAFKEGFFQGCGAYINDNGDPYIYASIGGKNFQIDIGNNFLVTDQTPQISTFSVNTRGRVSNVATYVCGAPHNLFPGMVVRLPEPVGALFTAGFFGDFVVQTIPSPTTFTTYSPGVDAGPLLGPNFTGYLLAANNPNAAHVYFQQAENWLIIQDGLNAPYLYDGTSFRRSASDEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPAFGRNSVIRFTENTFINEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLSYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVTRAIAYDTEFYLTAASSVNFDNRMLMTIQPQKINGRGIVHRGLVVLDFDLVSGMGRKLPPAWEGVWTGVDVFQMLTIRIQKQDRCFMFGLNQGDIGLFEVTKNGQFDFDGYDDVPIDWTIETRSITFAEPSNKKRLVSAEQWYDQVMGNIEAKVYFKANEGECWQPWAEIKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSE
Ga0194049_100007326F034904N/AMRKTLAQAKNSTIPQAIGLATCDERFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNLCGYNIPIQNQWYEFQTDTRAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLSADAGKRVLLQGLDPNGIPIRTLDSVTGEYVWGEYVTLPNPSITAYVRTSNRFKQPGLTGAQKPLTQGSLTIIAENDTTGLLTQVAVWGPSEQNPEYRRTYLIGMPEVCGGANSCSTTQDNCCIDNGDGCVPADETCTNTVVEAIVRLDFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQYRFGGFI
Ga0194049_10000733F063494N/AMSHQPPEIRAAAITQALHGQKAPEHLSPEGKYRFYERLGMLCGTAQATESQLRIALLEATEYDLNSDSEP
Ga0194049_10000736F085631N/AMKNTVRVSYRLPIEVAKMLEDEAVRARRTKTAVLIIAIEDHVWREEEEKPVDTKKKR
Ga0194049_10000737F028149AGGAGMATGNVISCKQFQSFLVSQEPVYDKEILKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRNTYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYDALSNTQPGAFACKAGLPAIAFSWVGTGYSVLRVTDTAAAAITAASLGLLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKDTFRYLSKDNPLLVSSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFVSTATAGNYRLVLPYRNVTATQGIRSEFNPDYNNAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVAGCAADPGDSAQDYNSADPVCPRVIQFTATTVTGGTNFVLNANASILCNDNYITSPAINAANVAALVVAIQAAWTAEFGASSGTWSVVSGNLIQISGTTCDNLTLEFSI
Ga0194049_10000739F078232AGGAGGMPVLTPQELADTGGCFDCMMPVLQQTMLLSLLQQIQVASFDAARTTASPGGLLTATATAAANPGRRRFVIQNQKTTEHLHLKFGTGCTTTDYHYVLLSAATAGAGASSLTFEGYTGAISVAPVAGSPSYTFAEFV
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