NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194050_1091180

Scaffold Ga0194050_1091180


Overview

Basic Information
Taxon OID3300020155 Open in IMG/M
Scaffold IDGa0194050_1091180 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L239-10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)826
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.663Long. (o)-93.723Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019324Metagenome / Metatranscriptome230Y
F084233Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0194050_10911801F084233N/AFYSCSPGGVNCWEVSTNDELCTTGFKTAGEALEYVLDKYPNHELQLNVKSLNWYFKEYADEYAI
Ga0194050_10911803F019324N/AMSMLGYERDDLDNMVLAVESALTTVNSDDDPWLHRNLTQASDFLQGLWAEGYFD

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