Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10983541 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10983541 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	97885
Total Scaffold Genes	149 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	132 (88.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

97885

Total Scaffold Genes

149 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

132 (88.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F006979	Metagenome / Metatranscriptome	360	Y
F009065	Metagenome / Metatranscriptome	323	Y
F021093	Metagenome / Metatranscriptome	220	Y
F085204	Metagenome / Metatranscriptome	111	N
F099186	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_10983541120	F006979	N/A	MRVTVPKVIKAAGEKHTIKKDKKGDIIVDHAGKKGKYDKINLTKKAGAKTVKAGVKATKDWHKKNG
Ga0211736_10983541148	F009065	AGAAG	MMNFFKKEPWVKPFSEKVSKRVSKIPTGDLEIWAEQALIEISKCLSGYSKNREQFYLDEALQGAEALHAVVNELHTRMTPR
Ga0211736_1098354125	F021093	GAGG	MGNPFLIAEDTALKTLLQGMTVGDEKTASRPVKVWFGYPDVEIRAQEFPFVTIDLIDMIPANDRQTSGQLVDNDYRGTVAPLSGKTYRYEVPVAFDLIYQITTYARHPRHDRAMMFQLTHKFPSKYGGLLVPNELGTETSRRHMFLDGFAKRDAVDGETGNRRLLRNIYTVRVISELTPLDAGRRASRVEEVLVNLPELTDQTSNIPTGLTKV
Ga0211736_1098354154	F085204	AGGA	MSINRTEDFLPKVDEFSVDSQIDERPTQSSSNAVLSGWDAAEKLTVSAGDYPTEFKFVDGEFTIVKFIDQNGPFAIYKQHFLQQKTVGKRSYVSLGANDPLCVKLGSKPEDKRAFTIAVVTPAGVVRQMLIASPRLYKTLYAAEFSPQGPLTKNYWAISRTGKMQQTVYHLNAVKSRDLMEDWGIDSDMAEKGVAEVKPFERSVIKEHTWAELEEIANSLL
Ga0211736_1098354176	F099186	GGA	MPGKYADGVYGHKPWDKDRAGVNTPEEAAFPPQEYLGPFQSNQDRLLNQSLATWTMSGAELQELVRPNLPQIKLFPERYGYVTEEIGIQDIIELPGRNENQVGQRVESDYSNTPNTTQSTSRNTLGGSV
Ga0211736_1098354179	F003439	AGGA	MAVNQSRSLNGDMSDGATDGKYRKRRPNTTVAAGMGDQDVVKNRAGLHPYMNYGFINSEEQAKVNPAGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10983541

Overview

Ecosystem & Geography

Associated Families

Sequences