NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211736_10957401

Scaffold Ga0211736_10957401


Overview

Basic Information
Taxon OID3300020151 Open in IMG/M
Scaffold IDGa0211736_10957401 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25251
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (14.89%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Associated Families16

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)4 to 10
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F001345Metagenome / Metatranscriptome718N
F003267Metagenome / Metatranscriptome496N
F003660Metagenome / Metatranscriptome474Y
F004837Metagenome / Metatranscriptome421Y
F005845Metagenome / Metatranscriptome388Y
F006105Metagenome / Metatranscriptome381Y
F007748Metagenome / Metatranscriptome345N
F008996Metagenome324N
F009057Metagenome / Metatranscriptome323Y
F011581Metagenome / Metatranscriptome289N
F012449Metagenome / Metatranscriptome280Y
F012656Metagenome / Metatranscriptome278N
F098895Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0211736_1095740111F012656N/AMDSLMMVITTLCDCIGAVEDSNSPNAFAVKMKIVDKIDELIDKIEY
Ga0211736_1095740113F004837N/AMTQDEFILATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALQYIYQEADLFAQANQQTVTHALNNPNP
Ga0211736_1095740114F012449AGGMDTLIFPLLISSLTALAIAEYHVLPQAWYSTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQLTNR
Ga0211736_1095740115F001345N/AMASADTIILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKIMQIHSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPDSPIPQAEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQNHGHADISPAD
Ga0211736_1095740119F005845N/AMKPTPTDFRRWQIHIRKECVSCSKPDRSETIKPWSVNWTLLGRILQAKNA
Ga0211736_1095740128F098895N/AMTLLETCNADVYKAILDIKASQPVMGEKLIAILQKHEWPFDLTGSDMLWFAAHLPRQIWDNKVHTFQFLFKSQQTTTMP
Ga0211736_109574013F000557N/AMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSIVRDMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGHFPKKYDGASHQERAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ
Ga0211736_1095740130F003660N/AMTHETKTKLKAALATGYIVLTTCLGIAFFGRFFFAIITN
Ga0211736_1095740132F011581N/AMTYHSTRPAKALTNALERLMIAISPQDLEQNHALLCEYRRACELLGYDPAKAQWSGIHEVSASQLPNEQDHTVCYYPLLNPEE
Ga0211736_1095740135F007748N/AVNLIETTIIGTISAIVGGAIAWLTRGRFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELVVLRQRIECLESTIHLLESENATLKAMQ
Ga0211736_1095740137F009057N/AMPTFRKFAFPNQATADKLLASLQPLDFAVPVGEIDNTVCMDVLFQDDCPASLNPYIVWPAPCGVHSFLGWDAQYEADYKEFATPQTK
Ga0211736_1095740140F001129N/AMLGQGGTMEFVDGLVSGKNYDFIVVNAAATFTTLTGTGGEDLLTAYAMSAKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0211736_1095740141F000847N/AMSWIRIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLVLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLSFQLPYSHSICEIPT
Ga0211736_1095740145F006105AGGVIYLSPNTTNTIVVTWTQRASTGDRYILRLTNIAKNVTTDFTLLKSANLSSYTNRYDKFSLAVGSLETGSYRYEVYDTSSTVGAAVAVVETGLAYVQVVSLTFNTFANSIQYTVFGSSDEGVFDQTFDPSFA
Ga0211736_109574015F008996N/AMKLLANIAYHHHPNRVENLIKVIEAIKSYPVQAEIFVDTNDPQAAQELAHLPVTFHAHTAMGHPWELTSKHRYRIAEVYQHFDWVAYFEDDMMLPKEGFVNFTKQFDAMFEDNLYPSFTRIETYPNREGEFSPDISFNLTPNMWREWNGKTYASLPFCNNYHAFWMFSTKRLAEVLSRNPQALQMIANTDLYRESMASLPIWSLGFAPMLEMTEQGELADQCKVYHLTNNYANVSMDIKQIFRR
Ga0211736_109574016F003267N/AMKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPEQRKLVKEILDNSLVAAKIKVVVTRTNAWEQATLTEMYKASQTEDAAYLYAHTKGGSDPSLVKQMWCRSMIFFNIVAWERTLVELEKVDAVGCHWLCTEQFPEIRDHNNPDGYPYFAGNFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYDPNPGWPSPDKFVTTF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.