Scaffold Ga0211736_10939136

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10939136
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6227
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F006220	Metagenome	378	Y
F039139	Metagenome	164	N
F095470	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1093913612	F039139	GGTGG	MFLNSFEFTTEDITTILRAHDTDISIQELVEISDALDYDSIARTALMFDDTELQTQAALSHAEDLMIMDGLWITEPKRFQMP
Ga0211736_109391363	F006220	GAGG	MKRKKYNEELNLASGTEMMRASQMRPTSFKDKSKYSRKAKHKNRQENNSGDSSL
Ga0211736_109391364	F095470	GGAG	MKKVVWVSDSLEHWNHSHHYEPLIEDLTGFNLAENLCSETVKYMAKRLKDTPYQRRFRSKYSIFENEYVALVEKFNTQADNNGKIEVK
Ga0211736_109391367	F001561	N/A	MNWNWKQMQTPEQKLKLLNKTIETIWHGVSDTKEGNYPKIISLYKEVLKLNPKDRDAWENMVWLMWSLSINKKDTAWMLEAEKFVKMYLSIMPNGYRSYEFVGQFYRVMLKDKKLAARYLESAIRWKDAPVTTHNSLIAIFNELGDKRKAIDYCKLTLARFPNDPYAKSKLETMTKL