Scaffold Ga0211736_10910649

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10910649
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10022
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005589	Metagenome	395	Y
F040107	Metagenome	162	N
F090404	Metagenome	108	Y
F101175	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_1091064911	F005589	GGAG	MSKFRHSFWRYVPSTEKFKSEFKFVESIETDSDAVPEFHDHYCIDQVVDLVTGQMRVKNHSAPEYCVSKYVGFNLCLPPVEKANKQDIYVVIHRSSFSHKKIEFDEFLEPKEKRYTQEEWEFLLSVIEKRFNKQKDWAKEGIRVPSQYEDGTQVFKTQEEFRAFSLGRRAYFLYHLVLNYKFTHLIRRLNIGYTSG
Ga0211736_109106493	F040107	GGAG	MTGIEALSLLKDGKTLRRTSWEAHEKCKALDFFGKWIIHLEKVQDDKILDKEIEKIFQNSFAFTKTTFDDFFGLFDKIEAGEFLHDDWEIVE
Ga0211736_109106494	F090404	GGAGG	VKFADVIDSLMSGKRVRKTNWESTTAFFIYDREDNTFDFYEVLDGEVCRTQFYSTLDLTPKDLMSDFWEIVE
Ga0211736_109106496	F101175	N/A	MLLIVLSLLQKIKMNGTDALTHLRAGYILRRKAWEPDIKCKAYFSDDMKSVKINIDDPILFALDTHLVPQWVPEKPEFSSYISYYDIIDNGDLLEDDWEIVDEVLRSN