Scaffold Ga0211736

Basic Information
Taxon OID	3300020151 Open in IMG/M
Scaffold ID	Ga0211736_10855783 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020151 Open in IMG/M

Scaffold ID

Ga0211736_10855783 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1839
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

1839

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	4 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

4 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F001043	Metagenome / Metatranscriptome	794	Y
F005504	Metagenome / Metatranscriptome	398	Y
F047650	Metagenome / Metatranscriptome	149	Y
F071228	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_108557831	F005504	N/A	LEFEEETGWGGEYEIVRGEVKENLEYTNMCYACQSYDTMDYCDNECGEFCSKCNQGSWKDDKAMAECQTHKVLLTTTETKGN
Ga0211736_108557832	F071228	AGGA	MEETYGATVTPIAVPDTYNPSALVQYKVINGENVTFPITKVTDLEWDLEQGRRWNKNYHDLKEKVNGLEELLIELYDPNYTKEEALQQIAELFGFELSKSVTVTGTINFEVIIQVPLDEVEDFDAHYKLGDELSLTSYGSDVEVNDWSIDSTDVDWN
Ga0211736_108557833	F000311	GGA	MYFELTAPDRLSMEMAYWDAQIIGLDPTAMSPLTFNIGTGSIEKVSKIRDKHNLIESYTSDYEPTGYTRR
Ga0211736_108557834	F001043	AGGAG	MSDYKDGFNDGYKFAREEIVEKLKEIDINDIDTWLLDRLADMIEGNQL
Ga0211736_108557835	F047650	GAGG	VMAEDVSVVYYCDSCSVARASYLVKLIDGELAFCAHHYNKSKKALDEKAYEVIELNKKEDSPKLKEMAE
Ga0211736_108557836	F000450	GGCGG	MGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIGDQWNMENGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEWADGRDPLNKVRGMNNKAIFTMDLTSFCEKYALERLLVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211736_10855783

Overview

Ecosystem & Geography

Associated Families

Sequences