Scaffold Ga0211736_10854137

Overview

Basic Information

• Taxon OID: 3300020151
• Scaffold ID: Ga0211736_10854137
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1074
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 4 to 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015209	Metagenome	256	N
F015472	Metagenome	254	Y
F056602	Metagenome	137	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211736_108541371	F074878	N/A	VIVKFRFRTPRMVYSVYFNGMLLTSGYDAQQLGEDYSRKYGVEWLLQDGDKFYSQKGLVK
Ga0211736_108541372	F015472	AGG	MAHYYLNQGGTRWVCDNKIQVTGDYKGKAYDKMRQPMFWESFGNFALCYVRVGRTVFCGFTEDNNGVTQLNLGKCKVVN
Ga0211736_108541373	F056602	AGG	MSNWTKGFIGVAIASQVFLFVILFGCKAGDAFYISGVDLFGMIMSSVCSLVYIPAILVSHDSDKIRKKINEQLQA
Ga0211736_108541374	F015209	N/A	MNSYRHKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGDIEDMELVIVAKPIDDVLRDVQIIP